Best Assembly Ascophyllum nodosum

Good quality assembly

Description


  • Genus: Ascophyllum
  • Species: nodosum
  • Strain: Unknown strain
  • Sex: Dioecious
  • Ploidy: Diploid
  • Common name: Feamainn bhuí, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack

Resources

Assembly

  • Sequencing: Illumina, Nanopore
  • Size: 1.17 Gbp
  • Number of contigs: 16273
  • GC content: 48.3%
  • N content: 0%
  • N50: 224.99 Kbp
  • L50: 1296

Annotation

  • Protein-coding genes: 24121
  • Gene length (average): 10376.08
  • Gene length (median): 4325.0
  • CDS length (average): 1187.12
  • CDS length (median): 684.0
  • CDS proportion (genome): 0.023%
  • Genes without introns: 5672
  • Number of contigs with at least one gene (genome): 33.0%
  • Number of contigs with at least one gene (bases): 77.2%

BUSCO results

Genome

  • Single-copy genes: 224
  • Duplicated genes: 8
  • Fragmented genes: 9
  • Missing genes: 62

Proteins

  • Single-copy genes: 258
  • Duplicated genes: 10
  • Fragmented genes: 17
  • Missing genes: 18