Tables describing the different organisms and their associated data using some common descriptors and metrics.
- Genome assemblies
- Structural annotations
- Structural annotations (BUSCO)
- Functionnal annotation (not yet available)
Genome assemblies metrics
Hover over icons to view corresponding captions ( )
Species | Sex | Ploidy | Sequencing | Assembly size | Number of contigs | GC content | N content | N50 | L50 |
---|---|---|---|---|---|---|---|---|---|
Best genome assembly for the species
Ascophyllum nodosum
Sequencing: Illumina, Nanopore
Good quality assembly
|
Dioecious | Diploid | Illumina, Nanopore | 1.17 Gbp | 16273 | 48.3% | 0% | 224.99 Kbp | 1296 |
Best genome assembly for the species
Chordaria linearis
Sequencing: Illumina, Nanopore
Near chromosome scale assembly
|
Monoicous | Undetermined | Illumina, Nanopore | 204.67 Mbp | 217 | 54.1% | 0% | 2.14 Mbp | 33 |
Best genome assembly for the species
Choristocarpus tenellus
Sequencing: Illumina, Nanopore
Draft genome
|
Unknown | Undetermined | Illumina, Nanopore | 156.39 Mbp | 27308 | 43.9% | 0% | 6.62 Kbp | 7369 |
Best genome assembly for the species
Chrysoparadoxa australica
Sequencing: Illumina
Draft genome
|
Unknown | Undetermined | Illumina | 55.92 Mbp | 13584 | 51.9% | 0% | 27.75 Kbp | 590 |
Sequencing: Illumina MatePE
|
Unknown | Diploid | Illumina MatePE | 123.9 Mbp | 541 | 54.3% | Undetermined | 406.3 Kbp | 91 |
Best genome assembly for the species
Desmarestia dudresnayi
Sequencing: Illumina
Draft genome
|
Monoicous | Haploid | Illumina | 421.08 Mbp | 90763 | 47.9% | 0% | 9.67 Kbp | 12088 |
Sequencing: Illumina, Nanopore
Good quality assembly
|
Female | Haploid | Illumina, Nanopore | 462.26 Mbp | 2593 | 48.4% | 0% | 546.67 Kbp | 249 |
Best genome assembly for the species
Desmarestia herbacea
Sequencing: Illumina, Nanopore
Good quality assembly
|
Male | Haploid | Illumina, Nanopore | 410.92 Mbp | 1483 | 48.1% | 0% | 876.92 Kbp | 142 |
Best genome assembly for the species
Dictyota dichotoma
Sequencing: Illumina, Nanopore
Good quality assembly
|
Male | Haploid | Illumina, Nanopore | 811.72 Mbp | 6019 | 50.2% | 0% | 245.22 Kbp | 1009 |
Best genome assembly for the species
Discosporangium mesarthrocarpum
Sequencing: Illumina
Draft genome
|
Unknown | Undetermined | Illumina | 153.4 Mbp | 28369 | 50.3% | 0% | 12.28 Kbp | 3521 |
Sequencing: Illumina
Draft genome
|
Female | Haploid | Illumina | 200.74 Mbp | 26101 | 52.1% | 0% | 18.41 Kbp | 2831 |
Best genome assembly for the species
Ectocarpus crouaniorum
Sequencing: Illumina, Nanopore
Near chromosome scale assembly
|
Male | Haploid | Illumina, Nanopore | 208.35 Mbp | 275 | 53.2% | 0% | 3.73 Mbp | 21 |
Sequencing: Illumina
Draft genome
|
Female | Haploid | Illumina | 158.18 Mbp | 35116 | 53.6% | 0% | 8.85 Kbp | 5030 |
Best genome assembly for the species
Ectocarpus fasciculatus
Sequencing: Illumina, Nanopore
Good quality assembly
|
Male | Haploid | Illumina, Nanopore | 217.02 Mbp | 781 | 53.4% | 0% | 655.38 Kbp | 94 |
Sequencing: Illumina
Draft genome
|
Unknown | Diploid | Illumina | 221.67 Mbp | 46543 | 52.8% | 0% | 11.84 Kbp | 4574 |
Sequencing: Illumina
Draft genome
|
Unknown | Diploid | Illumina | 187.26 Mbp | 42570 | 53.4% | 0% | 10.17 Kbp | 4979 |
Sequencing: Illumina
Draft genome
|
Female | Haploid | Illumina | 177.84 Mbp | 22843 | 53.7% | 0% | 25.4 Kbp | 2020 |
Best genome assembly for the species
Ectocarpus siliculosus
Sequencing: Illumina, Nanopore
Good quality assembly
|
Male | Haploid | Illumina, Nanopore | 190.9 Mbp | 1633 | 53.4% | 0% | 832.59 Kbp | 70 |
Sequencing: Illumina
Draft genome
|
Female | Haploid | Illumina | 177.72 Mbp | 19405 | 52.8% | 0% | 24.67 Kbp | 2096 |
Best genome assembly for the species
Ectocarpus species1
Sequencing: Illumina
Draft genome
|
Male | Haploid | Illumina | 179.48 Mbp | 23128 | 53.5% | 0% | 24.34 Kbp | 2129 |
Sequencing: Illumina
Draft genome
|
Male | Haploid | Illumina | 181.38 Mbp | 23044 | 53.5% | 0% | 23.18 Kbp | 2316 |
Sequencing: Illumina
Draft genome
|
Female | Diploid | Illumina | 362.31 Mbp | 90668 | 53.4% | 0% | 9.57 Kbp | 10414 |
Best genome assembly for the species
Ectocarpus species12
Sequencing: Illumina
Draft genome
|
Unknown | Diploid | Illumina | 358.1 Mbp | 85357 | 53.2% | 0% | 9.04 Kbp | 11090 |
Best genome assembly for the species
Ectocarpus species13
Sequencing: Illumina
Draft genome
|
Unknown | Diploid | Illumina | 240.32 Mbp | 102324 | 53.3% | 0.16% | 5.38 Kbp | 11229 |
Best genome assembly for the species
Ectocarpus species2
Sequencing: Illumina
Draft genome
|
Male | Haploid | Illumina | 174.92 Mbp | 32144 | 53.3% | 0% | 12.29 Kbp | 4087 |
Best genome assembly for the species
Ectocarpus species3
Sequencing: Illumina
Draft genome
|
Female | Haploid | Illumina | 199.26 Mbp | 61809 | 52.9% | 0% | 7.1 Kbp | 7781 |
Sequencing: Illumina
Draft genome
|
Male | Haploid | Illumina | 214.84 Mbp | 73265 | 53.2% | 0% | 7.55 Kbp | 7651 |
Best genome assembly for the species
Ectocarpus species5
Sequencing: Illumina
Draft genome
|
Female | Haploid | Illumina | 168.6 Mbp | 28565 | 53.7% | 0% | 15.96 Kbp | 2994 |
Sequencing: Illumina
Draft genome
|
Male | Haploid | Illumina | 152.47 Mbp | 45536 | 53.7% | 0% | 5.4 Kbp | 8318 |
Best genome assembly for the species
Ectocarpus species6
Sequencing: Illumina, Nanopore
Good quality assembly
|
Unknown | Diploid | Illumina, Nanopore | 204.52 Mbp | 434 | 53.4% | 0% | 1.29 Mbp | 47 |
Sequencing: Sanger
|
Male_plus_femaleSDR | Haploid | Sanger | 187.69 Mbp | 30 | 53.5% | 0% | 6.23 Mbp | 12 |
Best genome assembly for the species
Ectocarpus species8
Sequencing: Illumina
Draft genome
|
Unknown | Diploid | Illumina | 285.76 Mbp | 106905 | 53.4% | 0.26% | 5.12 Kbp | 15651 |
Best genome assembly for the species
Ectocarpus species9
Sequencing: Illumina
Draft genome
|
Female | Haploid | Illumina | 171.85 Mbp | 34031 | 53.7% | 0% | 13.51 Kbp | 3603 |
Sequencing: Illumina MatePE
|
Male | Haploid | Illumina MatePE | 231.17 Mbp | 1757 | 53.6% | 1113% | 498.7 Kbp | 158 |
Best genome assembly for the species
Feldmannia mitchelliae
Sequencing: Illumina
Draft genome
|
Monoicous | Haploid | Illumina | 196.39 Mbp | 27497 | 52.2% | 0% | 21.84 Kbp | 2457 |
Best genome assembly for the species
Fucus distichus
Sequencing: Illumina
Draft genome
|
Monoicous | Diploid | Illumina | 691.15 Mbp | 228768 | 47.9% | 0% | 5.47 Kbp | 35389 |
Best genome assembly for the species
Fucus serratus
Sequencing: Illumina, Nanopore
Good quality assembly
|
Male | Diploid | Illumina, Nanopore | 1.15 Gbp | 8882 | 48.3% | 0% | 282.2 Kbp | 1186 |
Best genome assembly for the species
Halopteris paniculata
Sequencing: Illumina
Draft genome
|
Monoicous | Undetermined | Illumina | 334.37 Mbp | 83026 | 48.3% | 0% | 9.3 Kbp | 9533 |
Sequencing: Illumina
Draft genome
|
Female | Haploid | Illumina | 183.85 Mbp | 26261 | 54.7% | 0% | 16.3 Kbp | 3235 |
Best genome assembly for the species
Hapterophycus canaliculatus
Sequencing: Illumina
Draft genome
|
Male | Haploid | Illumina | 175.52 Mbp | 74003 | 54.6% | 0% | 3.55 Kbp | 14755 |
Best genome assembly for the species
Heribaudiella fluviatilis
Sequencing: Illumina
Draft genome
|
Unknown | Undetermined | Illumina | 377.63 Mbp | 124447 | 51.5% | 0.12% | 5.78 Kbp | 16125 |
Best genome assembly for the species
Heterosigma akashiwo
Sequencing: Illumina, Nanopore
Good quality assembly
|
Unknown | Undetermined | Illumina, Nanopore | 1.42 Gbp | 4933 | 47.0% | 0% | 701.65 Kbp | 506 |
Best genome assembly for the species
Himanthalia elongata
Sequencing: Illumina
Draft genome
|
Dioecious | Diploid | Illumina | 749.07 Mbp | 325257 | 47.3% | 0% | 3.76 Kbp | 55511 |
Best genome assembly for the species
Laminaria digitata
Sequencing: Illumina, Nanopore
Draft genome
|
Male | Haploid | Illumina, Nanopore | 426.9 Mbp | 141688 | 50.3% | 0% | 6.08 Kbp | 18816 |
Best genome assembly for the species
Laminarionema elsbetiae
Sequencing: Illumina
Draft genome
|
Unknown | Haploid | Illumina | 226.78 Mbp | 37108 | 52.7% | 0% | 13.29 Kbp | 4881 |
Sequencing: Illumina
Draft genome
|
Male | Haploid | Illumina | 437.74 Mbp | 128700 | 50.6% | 0% | 8.33 Kbp | 14039 |
Best genome assembly for the species
Myriotrichia clavaeformis
Sequencing: Illumina
Draft genome
|
Female | Haploid | Illumina | 138.12 Mbp | 18254 | 54.9% | 0% | 24.82 Kbp | 1623 |
Sequencing: Illumina
Draft genome
|
Male | Haploid | Illumina | 150.16 Mbp | 32431 | 53.8% | 0% | 25.41 Kbp | 1655 |
Best genome assembly for the species
Pelvetia canaliculata
Sequencing: Illumina
Draft genome
|
Dioecious | Diploid | Illumina | 544.14 Mbp | 171596 | 48.8% | 0% | 7.52 Kbp | 19888 |
Best genome assembly for the species
Phaeosaccion multiseriatum
Sequencing: Illumina, Nanopore, Hi-C
Near chromosome scale assembly
|
Unknown | Undetermined | Illumina, Nanopore, Hi-C | Undetermined | Undetermined | Undetermined | Undetermined | Undetermined | Undetermined |
Best genome assembly for the species
Phaeothamnion wetherbeei
Sequencing: Illumina, Nanopore
Draft genome
|
Unknown | Undetermined | Illumina, Nanopore | 75.06 Mbp | 42337 | 61.2% | 0% | 3.14 Kbp | 6824 |
Best genome assembly for the species
Pleurocladia lacustris
Sequencing: Illumina, Nanopore
Good quality assembly
|
Unknown | Haploid | Illumina, Nanopore | 210.22 Mbp | 2680 | 52.1% | 0% | 116.13 Kbp | 555 |
Best genome assembly for the species
Porterinema fluviatile
Sequencing: Illumina, Nanopore
Near chromosome scale assembly
|
Unknown | Undetermined | Illumina, Nanopore | 159.45 Mbp | 110 | 54.5% | 0% | 2.5 Mbp | 22 |
Best genome assembly for the species
Pylaiella littoralis
Sequencing: Illumina, Nanopore
Good quality assembly
|
Unknown | Haploid | Illumina, Nanopore | 307.53 Mbp | 1708 | 51.4% | 0% | 344.68 Kbp | 274 |
Sequencing: Illumina MatePE, PacBio
|
Unknown | Diploid | Illumina MatePE, PacBio | 523.12 Mbp | 32 | 49.6% | 0.17% | 14.43 Mbp | 6 |
Best genome assembly for the species
Saccharina latissima
Sequencing: Illumina, PacBio
Good quality assembly
|
Female | Haploid | Illumina, PacBio | 506.66 Mbp | 4592 | 49.7% | 0% | 241.38 Kbp | 632 |
Best genome assembly for the species
Saccorhiza dermatodea
Sequencing: Illumina
Draft genome
|
Monoicous | Haploid | Illumina | 335.7 Mbp | 98404 | 50.6% | 0% | 6.5 Kbp | 13789 |
Sequencing: Illumina
Draft genome
|
Female | Haploid | Illumina | 498.12 Mbp | 139562 | 49.5% | 0% | 6.93 Kbp | 18815 |
Best genome assembly for the species
Saccorhiza polyschides
Sequencing: Illumina
Draft genome
|
Male | Haploid | Illumina | 531.63 Mbp | 138132 | 49.9% | 0% | 11.37 Kbp | 11919 |
Sequencing: Illumina PE, PacBio
|
Unknown | Diploid | Illumina PE, PacBio | 376.16 Mbp | 6749 | 48.4% | 0% | 138.75 Kbp | 775 |
Best genome assembly for the species
Schizocladia ischiensis
Sequencing: Illumina, Nanopore
Near chromosome scale assembly
|
Unknown | Undetermined | Illumina, Nanopore | 185.5 Mbp | 130 | 57.0% | 0% | 2.41 Mbp | 26 |
Sequencing: Illumina
Draft genome
|
Female | Haploid | Illumina | 245.01 Mbp | 89860 | 53.7% | 0% | 30.41 Kbp | 1751 |
Best genome assembly for the species
Scytosiphon promiscuus
Sequencing: Illumina, Nanopore
Near chromosome scale assembly
|
Male | Haploid | Illumina, Nanopore | 184.25 Mbp | 111 | 54.6% | 0% | 2.97 Mbp | 19 |
Best genome assembly for the species
Sphacelaria rigidula
Sequencing: Illumina
Draft genome
|
Female | Haploid | Illumina | 232.92 Mbp | 27212 | 49.8% | 0% | 8.81 Kbp | 9491 |
Best genome assembly for the species
Sphaerotrichia firma
Sequencing: Illumina
Draft genome
|
Female | Haploid | Illumina | 189.57 Mbp | 40448 | 56.1% | 0.10% | 10.71 Kbp | 4592 |
Sequencing: Illumina
Draft genome
|
Male | Haploid | Illumina | 146.52 Mbp | 29656 | 55.0% | 0% | 13.18 Kbp | 3113 |
Sequencing: PacBio + illumina
|
Unknown | Undetermined | PacBio + illumina | 151.01 Mbp | 557 | 56.9% | 0% | 750.62 Kbp | 66 |
Sequencing: Illumina, PacBio, genetic-map-based pseudochromosomes
|
Unknown | Diploid | Illumina, PacBio, genetic-map-based pseudochromosomes | 605.15 Mbp | 33 | 0% | 60.1% | 15.91 Mbp | 8 |
Structural annotations metrics
Hover over icons to view corresponding captions ( )
Species | Sex | Protein-coding genes | Exons per gene (mean | median) | CDS length (mean | median) | CDS percentage | Monoexonic genes | Contigs with at least one gene (percentage of genome | percentage of bases) | lncRNAs |
---|---|---|---|---|---|---|---|---|
Best genome assembly for the species
Ascophyllum nodosum
Sequencing:
Good quality assembly
|
Dioecious | 24121 | 5.61 | 3.0 | 1187.12 | 684.0 | 0.023% | 5672 | 33.0% | 77.2% | Undetermined |
Best genome assembly for the species
Chordaria linearis
Sequencing:
Near chromosome scale assembly
|
Monoicous | 17198 | 7.1 | 5.0 | 1520.22 | 1086.0 | 0.122% | 2795 | 87.1% | 99.4% | Undetermined |
Best genome assembly for the species
Choristocarpus tenellus
Sequencing:
Draft genome
|
Unknown | 13635 | 3.47 | 3.0 | 744.61 | 519.0 | 0.062% | 3189 | 38.1% | 50.1% | Undetermined |
Best genome assembly for the species
Chrysoparadoxa australica
Sequencing: Illumina
Draft genome
|
Unknown | 18609 | 6.95 | 4.0 | 1037.5 | 777.0 | 0.287% | 7454 | 36.4% | 80.2% | Undetermined |
Cladosiphon okamuranus
Sequencing: Illumina MatePE
|
Unknown | 13640 | 10.53 | 8.0 | 1993.22 | 1388.0 | 0.232% | 265 | 94.82% | 99.8% | Undetermined |
Best genome assembly for the species
Desmarestia dudresnayi
Sequencing: Illumina
Draft genome
|
Monoicous | 28809 | 3.15 | 2.0 | 816.83 | 555.0 | 0.053% | 9504 | 19.7% | 43.0% | Undetermined |
Desmarestia herbacea
Sequencing:
Good quality assembly
|
Female | 16759 | 6.44 | 4.0 | 1257.4 | 879.0 | 0.043% | 3057 | 49.4% | 87.6% | Undetermined |
Best genome assembly for the species
Desmarestia herbacea
Sequencing:
Good quality assembly
|
Male | 16271 | 6.84 | 5.0 | 1477.44 | 1122.0 | 0.05% | 2561 | 54.9% | 95.1% | Undetermined |
Best genome assembly for the species
Dictyota dichotoma
Sequencing:
Good quality assembly
|
Male | 20583 | 5.57 | 3.0 | 1190.84 | 741.0 | 0.029% | 5188 | 73.3% | 91.6% | Undetermined |
Best genome assembly for the species
Discosporangium mesarthrocarpum
Sequencing: Illumina
Draft genome
|
Unknown | 26708 | 3.08 | 2.0 | 730.96 | 525.0 | 0.119% | 11503 | 52.5% | 78.3% | Undetermined |
Ectocarpus crouaniorum
Sequencing: Illumina
Draft genome
|
Female | 18132 | 5.38 | 4.0 | 1185.65 | 816.0 | 0.102% | 3463 | 36.3% | 67.3% | Undetermined |
Best genome assembly for the species
Ectocarpus crouaniorum
Sequencing:
Near chromosome scale assembly
|
Male | 17770 | 7.51 | 6.0 | 1612.67 | 1179.0 | 0.131% | 2327 | 68.0% | 98.8% | Undetermined |
Ectocarpus fasciculatus
Sequencing: Illumina
Draft genome
|
Female | 18167 | 4.7 | 3.0 | 1042.37 | 693.0 | 0.113% | 3757 | 33.0% | 65.0% | Undetermined |
Best genome assembly for the species
Ectocarpus fasciculatus
Sequencing:
Good quality assembly
|
Male | 19173 | 6.18 | 5.0 | 1220.93 | 972.0 | 0.103% | 2822 | 91.1% | 98.6% | Undetermined |
Ectocarpus fasciculatus
Sequencing: Illumina
Draft genome
|
Unknown | 22946 | 4.53 | 3.0 | 1164.55 | 831.0 | 11.2% | 5577 | 23.8% | 65.6% | Undetermined |
Ectocarpus fasciculatus
Sequencing: Illumina
Draft genome
|
Unknown | 17977 | 5.02 | 4.0 | 1107.21 | 741.0 | 9.4% | 3378 | 23.8% | 58.6% | Undetermined |
Ectocarpus siliculosus
Sequencing: Illumina
Draft genome
|
Female | 18119 | 6.02 | 4.0 | 1353.22 | 936.0 | 12.8% | 3720 | 29.3% | 78.2% | Undetermined |
Best genome assembly for the species
Ectocarpus siliculosus
Sequencing:
Good quality assembly
|
Male | 17801 | 7.52 | 6.0 | 1631.23 | 1194.0 | 0.145% | 2466 | 41.0% | 96.9% | Undetermined |
Ectocarpus species1
Sequencing: Illumina
Draft genome
|
Female | 19066 | 5.71 | 4.0 | 1256.42 | 834.0 | 10.3% | 3883 | 16.8% | 66.4% | Undetermined |
Best genome assembly for the species
Ectocarpus species1
Sequencing: Illumina
Draft genome
|
Male | 18068 | 5.93 | 4.0 | 1330.69 | 924.0 | 11.6% | 3707 | 19.3% | 74.2% | Undetermined |
Ectocarpus species1
Sequencing: Illumina
Draft genome
|
Male | 19620 | 5.56 | 4.0 | 1257.72 | 825.0 | 12.9% | 4755 | 35.4% | 80.4% | Undetermined |
Ectocarpus species12
Sequencing: Illumina
Draft genome
|
Female | 38530 | 4.31 | 3.0 | 924.69 | 585.0 | 0.091% | 10255 | 25.0% | 60.6% | Undetermined |
Best genome assembly for the species
Ectocarpus species12
Sequencing: Illumina
Draft genome
|
Unknown | 48353 | 3.44 | 2.0 | 835.29 | 558.0 | 0.108% | 21099 | 38.6% | 62.9% | Undetermined |
Best genome assembly for the species
Ectocarpus species13
Sequencing: Illumina
Draft genome
|
Unknown | 21643 | 4.11 | 3.0 | 912.17 | 567.0 | 0.077% | 5754 | 15.4% | 46.0% | Undetermined |
Best genome assembly for the species
Ectocarpus species2
Sequencing: Illumina
Draft genome
|
Male | 16843 | 5.18 | 4.0 | 1144.23 | 786.0 | 9.6% | 3278 | 25.8% | 62.5% | Undetermined |
Best genome assembly for the species
Ectocarpus species3
Sequencing: Illumina
Draft genome
|
Female | 18004 | 4.93 | 4.0 | 1167.22 | 807.0 | 0.101% | 3598 | 20.7% | 55.1% | Undetermined |
Ectocarpus species3
Sequencing: Illumina
Draft genome
|
Male | 18101 | 4.69 | 3.0 | 1081.61 | 678.0 | 8.6% | 4436 | 16.1% | 52.1% | Undetermined |
Best genome assembly for the species
Ectocarpus species5
Sequencing: Illumina
Draft genome
|
Female | 17193 | 5.67 | 4.0 | 1257.15 | 873.0 | 12.1% | 2972 | 31.4% | 73.7% | Undetermined |
Ectocarpus species5
Sequencing: Illumina
Draft genome
|
Male | 20082 | 3.66 | 3.0 | 818.83 | 531.0 | 0.102% | 5505 | 34.2% | 56.9% | Undetermined |
Best genome assembly for the species
Ectocarpus species6
Sequencing:
Good quality assembly
|
Unknown | 18873 | 7.14 | 5.0 | 1510.96 | 1113.0 | 0.133% | 2520 | 92.9% | 99.1% | Undetermined |
Ectocarpus species7
Sequencing: Sanger
|
Male_plus_femaleSDR | 16709 | 8.76 | 7.0 | 1610.39 | 1119.0 | 0.198% | 1400 | 100.0% | 100.0% | 883 |
Best genome assembly for the species
Ectocarpus species8
Sequencing: Illumina
Draft genome
|
Unknown | 31882 | 3.6 | 2.0 | 774.98 | 498.0 | 0.082% | 9141 | 23.4% | 49.9% | Undetermined |
Best genome assembly for the species
Ectocarpus species9
Sequencing: Illumina
Draft genome
|
Female | 18057 | 5.25 | 4.0 | 1163.15 | 762.0 | 9.8% | 3523 | 21.5% | 59.9% | Undetermined |
Ectocarpus subulatus
Sequencing: Illumina MatePE
|
Male | 25785 | 5.38 | 4.0 | 1341.94 | 959.5 | 14.27% | 4057 | 82.18% | 99.5% | Undetermined |
Best genome assembly for the species
Feldmannia mitchelliae
Sequencing: Illumina
Draft genome
|
Monoicous | 17647 | 5.76 | 4.0 | 1303.74 | 867.0 | 0.112% | 3576 | 30.8% | 75.6% | Undetermined |
Best genome assembly for the species
Fucus distichus
Sequencing: Illumina
Draft genome
|
Monoicous | 19428 | 3.41 | 2.0 | 731.54 | 483.0 | 0.02% | 6362 | 7.4% | 16.2% | Undetermined |
Best genome assembly for the species
Fucus serratus
Sequencing:
Good quality assembly
|
Male | 21263 | 6.07 | 4.0 | 1202.77 | 837.0 | 0.021% | 3795 | 49.8% | 79.6% | Undetermined |
Best genome assembly for the species
Halopteris paniculata
Sequencing: Illumina
Draft genome
|
Monoicous | 17571 | 4.41 | 3.0 | 997.12 | 603.0 | 0.05% | 4769 | 15.5% | 46.0% | Undetermined |
Hapterophycus canaliculatus
Sequencing: Illumina
Draft genome
|
Female | 20036 | 5.0 | 3.0 | 1101.6 | 717.0 | 0.114% | 4898 | 38.4% | 74.8% | Undetermined |
Best genome assembly for the species
Hapterophycus canaliculatus
Sequencing: Illumina
Draft genome
|
Male | 25107 | 2.83 | 2.0 | 571.47 | 372.0 | 0.076% | 8967 | 29.3% | 42.8% | Undetermined |
Best genome assembly for the species
Heribaudiella fluviatilis
Sequencing: Illumina
Draft genome
|
Unknown | 41302 | 4.49 | 3.0 | 706.69 | 480.0 | 0.073% | 8994 | 23.2% | 48.0% | Undetermined |
Best genome assembly for the species
Heterosigma akashiwo
Sequencing:
Good quality assembly
|
Unknown | 15415 | 2.99 | 2.0 | 633.69 | 462.0 | 0.06% | 5802 | 66.8% | 93.6% | Undetermined |
Best genome assembly for the species
Himanthalia elongata
Sequencing: Illumina
Draft genome
|
Dioecious | 17308 | 3.15 | 2.0 | 686.22 | 432.0 | 0.015% | 6120 | 4.9% | 10.3% | Undetermined |
Best genome assembly for the species
Laminaria digitata
Sequencing:
Draft genome
|
Male | 42270 | 2.11 | 1.0 | 594.94 | 423.0 | 0.055% | 27401 | 21.9% | 36.9% | Undetermined |
Best genome assembly for the species
Laminarionema elsbetiae
Sequencing: Illumina
Draft genome
|
Unknown | 18917 | 4.68 | 3.0 | 1044.26 | 642.0 | 7.7% | 5108 | 25.3% | 59.0% | Undetermined |
Macrocystis pyrifera
Sequencing: Illumina
Draft genome
|
Male | 22998 | 2.59 | 1.0 | 719.41 | 516.0 | 0.0035% | 13232 | 15.0% | 25.0% | Undetermined |
Best genome assembly for the species
Myriotrichia clavaeformis
Sequencing: Illumina
Draft genome
|
Female | 21281 | 5.97 | 4.0 | 1305.46 | 945.0 | 0.169% | 4555 | 35.3% | 78.3% | Undetermined |
Myriotrichia clavaeformis
Sequencing: Illumina
Draft genome
|
Male | 25205 | 5.2 | 3.0 | 1177.47 | 753.0 | 0.163% | 7242 | 26.9% | 73.3% | Undetermined |
Best genome assembly for the species
Pelvetia canaliculata
Sequencing: Illumina
Draft genome
|
Dioecious | 24108 | 3.18 | 2.0 | 992.22 | 633.0 | 0.04% | 11356 | 8.8% | 24.5% | Undetermined |
Best genome assembly for the species
Phaeosaccion multiseriatum
Sequencing:
Near chromosome scale assembly
|
Unknown | Undetermined | Undetermined | Undetermined | Undetermined | Undetermined | Undetermined | Undetermined |
Best genome assembly for the species
Phaeothamnion wetherbeei
Sequencing:
Draft genome
|
Unknown | 26911 | 1.97 | 1.0 | 788.88 | 606.0 | 0.224% | 17105 | 34.3% | 55.7% | Undetermined |
Best genome assembly for the species
Pleurocladia lacustris
Sequencing:
Good quality assembly
|
Unknown | 16268 | 5.82 | 4.0 | 1139.9 | 885.0 | 0.056% | 2726 | 76.1% | 64.7% | Undetermined |
Best genome assembly for the species
Porterinema fluviatile
Sequencing:
Near chromosome scale assembly
|
Unknown | 15519 | 7.13 | 5.0 | 1492.35 | 1092.0 | 0.139% | 2449 | 99.1% | 100.0% | Undetermined |
Best genome assembly for the species
Pylaiella littoralis
Sequencing:
Good quality assembly
|
Unknown | 22501 | 5.87 | 3.0 | 1309.47 | 798.0 | 0.091% | 5559 | 89.1% | 99.2% | Undetermined |
Saccharina japonica
Sequencing: Illumina MatePE, PacBio
|
Unknown | 18732 | 6.49 | 5.0 | 1657.5 | 1252.0 | 0.056% | 2802 | 100.0% | 100.0% | Undetermined |
Best genome assembly for the species
Saccharina latissima
Sequencing: Illumina, PacBio
Good quality assembly
|
Female | 17672 | 5.92 | 4.0 | 1171.78 | 777.0 | 0.039% | 3412 | 59.6% | 88.7% | Undetermined |
Best genome assembly for the species
Saccorhiza dermatodea
Sequencing: Illumina
Draft genome
|
Monoicous | 17913 | 3.55 | 2.0 | 758.97 | 429.0 | 0.039% | 6274 | 14.1% | 33.9% | Undetermined |
Saccorhiza polyschides
Sequencing: Illumina
Draft genome
|
Female | 20384 | 3.42 | 2.0 | 758.15 | 444.0 | 0.03% | 7487 | 11.1% | 26.5% | Undetermined |
Best genome assembly for the species
Saccorhiza polyschides
Sequencing: Illumina
Draft genome
|
Male | 19747 | 3.75 | 2.0 | 816.07 | 489.0 | 0.029% | 6768 | 9.8% | 32.8% | Undetermined |
Sargassum fusiforme
Sequencing: Illumina PE, PacBio
|
Unknown | 19404 | 6.81 | 5.0 | 1358.69 | 978.0 | 0.069% | 3048 | 46.0% | 80.39% | Undetermined |
Best genome assembly for the species
Schizocladia ischiensis
Sequencing:
Near chromosome scale assembly
|
Unknown | 21187 | 4.7 | 3.0 | 857.41 | 615.0 | 0.093% | 4473 | 99.2% | 100.0% | Undetermined |
Scytosiphon promiscuus
Sequencing: Illumina
Draft genome
|
Female | 30281 | 4.49 | 2.0 | 970.69 | 591.0 | 0.113% | 13397 | 16.0% | 65.9% | Undetermined |
Best genome assembly for the species
Scytosiphon promiscuus
Sequencing:
Near chromosome scale assembly
|
Male | 19218 | 7.16 | 5.0 | 1536.8 | 1101.0 | 0.113% | 3126 | 100.0% | 100.0% | Undetermined |
Best genome assembly for the species
Sphacelaria rigidula
Sequencing: Illumina
Draft genome
|
Female | 14181 | 2.9 | 2.0 | 756.76 | 450.0 | 0.044% | 5945 | 40.7% | 45.7% | Undetermined |
Best genome assembly for the species
Sphaerotrichia firma
Sequencing: Illumina
Draft genome
|
Female | 27957 | 4.68 | 3.0 | 1123.65 | 768.0 | 0.156% | 6738 | 35.8% | 72.6% | Undetermined |
Sphaerotrichia firma
Sequencing: Illumina
Draft genome
|
Male | 20973 | 5.35 | 4.0 | 1174.24 | 786.0 | 0.16% | 4598 | 35.5% | 77.5% | Undetermined |
Tribonema minus
Sequencing: PacBio + illumina
|
Unknown | 18290 | 5.93 | 4.0 | 1399.81 | 1023.0 | 0.1617% | 3277 | 86.35% | 99.03% | Undetermined |
Undaria pinnatifida
Sequencing: Illumina, PacBio, genetic-map-based pseudochromosomes
|
Unknown | 20716 | 6.82 | 5.0 | 1343.43 | 998.5 | 0.0438% | 281 | 93.93% | 99.97% | Undetermined |
BUSCO metrics
Hover over icons to view corresponding captions ( )
Species | Sex | Single copy genes (genome) | Duplicated genes (genome) | Fragmented genes (genome) | Missing genes (genomes) | Single copy genes (proteome) | Duplicated genes (proteome) | Fragmented genes (proteome) | Missing genes (proteome) |
---|---|---|---|---|---|---|---|---|---|
Best genome assembly for the species
Ascophyllum nodosum
Sequencing:
Good quality assembly
|
Dioecious | 224 | 8 | 9 | 62 | 258 | 10 | 17 | 18 |
Best genome assembly for the species
Chordaria linearis
Sequencing:
Near chromosome scale assembly
|
Monoicous | 237 | 4 | 15 | 47 | 275 | 4 | 13 | 11 |
Best genome assembly for the species
Choristocarpus tenellus
Sequencing:
Draft genome
|
Undetermined | 94 | 1 | 71 | 137 | 124 | 7 | 94 | 78 |
Best genome assembly for the species
Chrysoparadoxa australica
Sequencing: Illumina
Draft genome
|
Undetermined | 209 | 6 | 24 | 64 | 239 | 8 | 30 | 26 |
Cladosiphon okamuranus
Sequencing: Illumina MatePE
|
Undetermined | 240 | 2 | 8 | 53 | 222 | 23 | 35 | 23 |
Best genome assembly for the species
Desmarestia dudresnayi
Sequencing: Illumina
Draft genome
|
Monoicous | 135 | 65 | 48 | 55 | 156 | 88 | 46 | 13 |
Desmarestia herbacea
Sequencing:
Good quality assembly
|
Female | 218 | 4 | 19 | 62 | 267 | 12 | 15 | 9 |
Best genome assembly for the species
Desmarestia herbacea
Sequencing:
Good quality assembly
|
Male | 216 | 3 | 20 | 64 | 269 | 8 | 18 | 8 |
Best genome assembly for the species
Dictyota dichotoma
Sequencing:
Good quality assembly
|
Male | 212 | 3 | 19 | 69 | 252 | 9 | 14 | 28 |
Best genome assembly for the species
Discosporangium mesarthrocarpum
Sequencing: Illumina
Draft genome
|
Undetermined | 136 | 8 | 63 | 96 | 165 | 16 | 89 | 33 |
Ectocarpus crouaniorum
Sequencing: Illumina
Draft genome
|
Female | 180 | 9 | 39 | 75 | 194 | 10 | 53 | 46 |
Best genome assembly for the species
Ectocarpus crouaniorum
Sequencing:
Near chromosome scale assembly
|
Male | 230 | 5 | 13 | 55 | 273 | 7 | 14 | 9 |
Ectocarpus fasciculatus
Sequencing: Illumina
Draft genome
|
Female | 142 | 1 | 86 | 74 | 163 | 2 | 91 | 47 |
Best genome assembly for the species
Ectocarpus fasciculatus
Sequencing:
Good quality assembly
|
Male | 231 | 2 | 17 | 53 | 234 | 7 | 39 | 23 |
Ectocarpus fasciculatus
Sequencing: Illumina
Draft genome
|
Undetermined | 221 | 38 | 15 | 29 | 184 | 77 | 24 | 18 |
Ectocarpus fasciculatus
Sequencing: Illumina
Draft genome
|
Undetermined | 173 | 3 | 67 | 60 | 189 | 6 | 72 | 36 |
Ectocarpus siliculosus
Sequencing: Illumina
Draft genome
|
Female | 197 | 4 | 39 | 63 | 225 | 6 | 33 | 39 |
Best genome assembly for the species
Ectocarpus siliculosus
Sequencing:
Good quality assembly
|
Male | 233 | 4 | 15 | 51 | 278 | 7 | 10 | 8 |
Ectocarpus species1
Sequencing: Illumina
Draft genome
|
Female | 202 | 2 | 38 | 61 | 222 | 5 | 38 | 38 |
Best genome assembly for the species
Ectocarpus species1
Sequencing: Illumina
Draft genome
|
Male | 197 | 7 | 38 | 61 | 221 | 5 | 37 | 40 |
Ectocarpus species1
Sequencing: Illumina
Draft genome
|
Male | 195 | 4 | 47 | 57 | 212 | 7 | 47 | 37 |
Ectocarpus species12
Sequencing: Illumina
Draft genome
|
Female | 129 | 48 | 51 | 75 | 165 | 3 | 76 | 59 |
Best genome assembly for the species
Ectocarpus species12
Sequencing: Illumina
Draft genome
|
Undetermined | 126 | 33 | 59 | 85 | 156 | 69 | 61 | 17 |
Best genome assembly for the species
Ectocarpus species13
Sequencing: Illumina
Draft genome
|
Undetermined | 150 | 2 | 75 | 76 | 165 | 3 | 76 | 59 |
Best genome assembly for the species
Ectocarpus species2
Sequencing: Illumina
Draft genome
|
Male | 172 | 9 | 50 | 72 | 194 | 5 | 65 | 39 |
Best genome assembly for the species
Ectocarpus species3
Sequencing: Illumina
Draft genome
|
Female | 143 | 3 | 59 | 98 | 185 | 8 | 66 | 44 |
Ectocarpus species3
Sequencing: Illumina
Draft genome
|
Male | 162 | 4 | 65 | 72 | 177 | 5 | 73 | 48 |
Best genome assembly for the species
Ectocarpus species5
Sequencing: Illumina
Draft genome
|
Female | 195 | 0 | 46 | 62 | 218 | 4 | 49 | 32 |
Ectocarpus species5
Sequencing: Illumina
Draft genome
|
Male | 114 | 1 | 106 | 82 | 136 | 3 | 101 | 63 |
Best genome assembly for the species
Ectocarpus species6
Sequencing:
Good quality assembly
|
Undetermined | 221 | 14 | 12 | 56 | 258 | 18 | 14 | 13 |
Ectocarpus species7
Sequencing: Sanger
|
Male_plus_femaleSDR | 231 | 2 | 22 | 48 | 249 | 29 | 11 | 14 |
Best genome assembly for the species
Ectocarpus species8
Sequencing: Illumina
Draft genome
|
Undetermined | 99 | 24 | 94 | 86 | 146 | 29 | 107 | 21 |
Best genome assembly for the species
Ectocarpus species9
Sequencing: Illumina
Draft genome
|
Female | 170 | 2 | 65 | 66 | 195 | 5 | 53 | 50 |
Ectocarpus subulatus
Sequencing: Illumina MatePE
|
Male | 228 | 3 | 20 | 52 | 226 | 9 | 32 | 36 |
Best genome assembly for the species
Feldmannia mitchelliae
Sequencing: Illumina
Draft genome
|
Monoicous | 185 | 3 | 48 | 67 | 223 | 10 | 46 | 24 |
Best genome assembly for the species
Fucus distichus
Sequencing: Illumina
Draft genome
|
Monoicous | 110 | 2 | 85 | 106 | 144 | 5 | 109 | 45 |
Best genome assembly for the species
Fucus serratus
Sequencing:
Good quality assembly
|
Male | 221 | 16 | 10 | 66 | 257 | 16 | 15 | 15 |
Best genome assembly for the species
Halopteris paniculata
Sequencing: Illumina
Draft genome
|
Monoicous | 144 | 2 | 76 | 81 | 167 | 7 | 79 | 50 |
Hapterophycus canaliculatus
Sequencing: Illumina
Draft genome
|
Female | 186 | 1 | 52 | 64 | 214 | 6 | 57 | 26 |
Best genome assembly for the species
Hapterophycus canaliculatus
Sequencing: Illumina
Draft genome
|
Male | 64 | 0 | 122 | 117 | 117 | 1 | 147 | 38 |
Best genome assembly for the species
Heribaudiella fluviatilis
Sequencing: Illumina
Draft genome
|
Undetermined | 109 | 5 | 58 | 131 | 186 | 63 | 44 | 10 |
Best genome assembly for the species
Heterosigma akashiwo
Sequencing:
Good quality assembly
|
Undetermined | 135 | 30 | 25 | 113 | 110 | 16 | 66 | 111 |
Best genome assembly for the species
Himanthalia elongata
Sequencing: Illumina
Draft genome
|
Dioecious | 83 | 2 | 99 | 119 | 116 | 3 | 127 | 57 |
Best genome assembly for the species
Laminaria digitata
Sequencing:
Draft genome
|
Male | 101 | 4 | 95 | 103 | 121 | 11 | 119 | 52 |
Best genome assembly for the species
Laminarionema elsbetiae
Sequencing: Illumina
Draft genome
|
Undetermined | 152 | 0 | 77 | 74 | 158 | 6 | 81 | 58 |
Macrocystis pyrifera
Sequencing: Illumina
Draft genome
|
Male | 114 | 4 | 89 | 96 | 150 | 15 | 102 | 36 |
Best genome assembly for the species
Myriotrichia clavaeformis
Sequencing: Illumina
Draft genome
|
Female | 221 | 5 | 22 | 55 | 252 | 8 | 26 | 17 |
Myriotrichia clavaeformis
Sequencing: Illumina
Draft genome
|
Male | 192 | 7 | 29 | 75 | 231 | 22 | 38 | 12 |
Best genome assembly for the species
Pelvetia canaliculata
Sequencing: Illumina
Draft genome
|
Dioecious | 272 | 20 | 5 | 6 | 232 | 53 | 9 | 9 |
Best genome assembly for the species
Phaeosaccion multiseriatum
Sequencing:
Near chromosome scale assembly
|
Undetermined | 250 | 3 | 13 | 37 | Undetermined | Undetermined | Undetermined | Undetermined |
Best genome assembly for the species
Phaeothamnion wetherbeei
Sequencing:
Draft genome
|
Undetermined | 194 | 7 | 52 | 50 | 208 | 10 | 62 | 23 |
Best genome assembly for the species
Pleurocladia lacustris
Sequencing:
Good quality assembly
|
Undetermined | 204 | 4 | 27 | 68 | 216 | 8 | 52 | 27 |
Best genome assembly for the species
Porterinema fluviatile
Sequencing:
Near chromosome scale assembly
|
Undetermined | 226 | 3 | 24 | 50 | 266 | 4 | 21 | 12 |
Best genome assembly for the species
Pylaiella littoralis
Sequencing:
Good quality assembly
|
Undetermined | 218 | 4 | 17 | 64 | 276 | 3 | 9 | 15 |
Saccharina japonica
Sequencing: Illumina MatePE, PacBio
|
Undetermined | 210 | 3 | 23 | 67 | 237 | 8 | 29 | 29 |
Best genome assembly for the species
Saccharina latissima
Sequencing: Illumina, PacBio
Good quality assembly
|
Female | 203 | 3 | 22 | 75 | 242 | 8 | 33 | 20 |
Best genome assembly for the species
Saccorhiza dermatodea
Sequencing: Illumina
Draft genome
|
Monoicous | 98 | 0 | 94 | 111 | 111 | 1 | 117 | 74 |
Saccorhiza polyschides
Sequencing: Illumina
Draft genome
|
Female | 91 | 1 | 95 | 116 | 125 | 2 | 115 | 61 |
Best genome assembly for the species
Saccorhiza polyschides
Sequencing: Illumina
Draft genome
|
Male | 118 | 2 | 90 | 93 | 155 | 6 | 87 | 55 |
Sargassum fusiforme
Sequencing: Illumina PE, PacBio
|
Undetermined | 218 | 8 | 13 | 64 | 251 | 23 | 19 | 10 |
Best genome assembly for the species
Schizocladia ischiensis
Sequencing:
Near chromosome scale assembly
|
Undetermined | 220 | 4 | 33 | 46 | 223 | 16 | 36 | 28 |
Scytosiphon promiscuus
Sequencing: Illumina
Draft genome
|
Female | 227 | 2 | 23 | 51 | 247 | 8 | 32 | 16 |
Best genome assembly for the species
Scytosiphon promiscuus
Sequencing:
Near chromosome scale assembly
|
Male | 241 | 4 | 12 | 46 | 280 | 5 | 8 | 10 |
Best genome assembly for the species
Sphacelaria rigidula
Sequencing: Illumina
Draft genome
|
Female | 55 | 1 | 64 | 183 | 85 | 5 | 73 | 140 |
Best genome assembly for the species
Sphaerotrichia firma
Sequencing: Illumina
Draft genome
|
Female | 216 | 24 | 32 | 31 | 187 | 78 | 30 | 8 |
Sphaerotrichia firma
Sequencing: Illumina
Draft genome
|
Male | 193 | 1 | 53 | 56 | 221 | 7 | 57 | 18 |
Tribonema minus
Sequencing: PacBio + illumina
|
Undetermined | 235 | 7 | 12 | 49 | 257 | 13 | 13 | 20 |
Undaria pinnatifida
Sequencing: Illumina, PacBio, genetic-map-based pseudochromosomes
|
Undetermined | 220 | 0 | 12 | 71 | 239 | 8 | 23 | 33 |