Sphaerotrichia firma (Male)
Draft genome
Description
- Genus: Sphaerotrichia
- Species: firma
- Strain: Sfir 13m
- Sex: Male
- Ploidy: Haploid
- Common name: No common name known
Resources
- Genome browser ↵
- Genome database ↵
- AlgaeBase ↵
- WORMS ↵
- NCBI ↵
- Roscoff Culture Collection (Not yet available)
World occurrences (from GBIF)
Assembly
- Sequencing: Illumina
- Size: 153.64 Mbp
- Number of contigs: 29656
- GC content: 55.0%
- N content: 0%
- N50: 13.5 Kbp
- L50: 3113
Annotation
- Protein-coding genes: 20973
- Gene length (average): 3859.6
- Gene length (median): 2930.0
- CDS length (average): 1174.24
- CDS length (median): 786.0
- CDS proportion (genome): 0.16%
- Genes without introns: 4598
- Number of contigs with at least one gene (genome): 35.5%
- Number of contigs with at least one gene (bases): 77.5%
BUSCO results
Genome
- Single-copy genes: 193
- Duplicated genes: 1
- Fragmented genes: 53
- Missing genes: 56
Proteins
- Single-copy genes: 221
- Duplicated genes: 7
- Fragmented genes: 57
- Missing genes: 18
Additional genome assemblies for this species
-
Sphaerotrichia firma ET2 F Female
Best genome assembly for the species
Sequencing: Illumina
Draft genome