You are viewing Sphaerotrichia firma Sfir 13m Male , to access additional genome assemblies for this species, click here

Sphaerotrichia firma (Male)

Draft genome

AlgaeBase

Worms

GGA

GGA

ncbi

Description


  • Genus: Sphaerotrichia
  • Species: firma
  • Strain: Sfir 13m
  • Sex: Male
  • Ploidy: Haploid
  • Common name: No common name known

Resources

Assembly

  • Sequencing: Illumina
  • Size: 146.52 Mbp
  • Number of contigs: 29656
  • GC content: 55.0%
  • N content: 0%
  • N50: 13.18 Kbp
  • L50: 3113

Annotation

  • Protein-coding genes: 20973
  • Gene length (average): 3859.6
  • Gene length (median): 2930.0
  • CDS length (average): 1174.24
  • CDS length (median): 786.0
  • CDS proportion (genome): 0.16%
  • Genes without introns: 4598
  • Number of contigs with at least one gene (genome): 35.5%
  • Number of contigs with at least one gene (bases): 77.5%

BUSCO results

Genome

  • Single-copy genes: 193
  • Duplicated genes: 1
  • Fragmented genes: 53
  • Missing genes: 56

Proteins

  • Single-copy genes: 221
  • Duplicated genes: 7
  • Fragmented genes: 57
  • Missing genes: 18

Additional genome assemblies for this species