Phaeoexplorer genomes

Upcoming Phaeoexplorer genomes

Public brown algal genomes analysed in Phaeoexplorer

Both male and female strains were sequenced for some species.

The Home page provides access to the best quality genome for each species (designated with the logo ), whereas this page provides access to all the genomes, i.e. both male and female where appropriate.

Phaeoexplorer genomes

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Good quality assembly
Sequencing: Illumina, Nanopore
Best genome assembly for the species
Ascophyllum
nodosum
Male
Near chromosome scale assembly
Sequencing: Illumina, Nanopore
Best genome assembly for the species
Chordaria
linearis
Monoicous
Draft genome
Sequencing: Illumina, Nanopore
Best genome assembly for the species
© D. Scornet CNRS
Choristocarpus
tenellus
Draft genome
Sequencing: Illumina
Best genome assembly for the species
Chrysoparadoxa
australica
Draft genome
Sequencing: Illumina
Best genome assembly for the species
Desmarestia
dudresnayi
Monoicous
Good quality assembly
Sequencing: Illumina, Nanopore
Best genome assembly for the species
Desmarestia
herbacea
Male
Good quality assembly
Sequencing: Illumina, Nanopore
Desmarestia
herbacea
Female
Good quality assembly
Sequencing: Illumina, Nanopore
Best genome assembly for the species
Dictyota
dichotoma
Male
Draft genome
Sequencing: Illumina
Best genome assembly for the species
Discosporangium
mesarthrocarpum
Near chromosome scale assembly
Sequencing: Illumina, Nanopore
Best genome assembly for the species
© D. Scornet CNRS
Ectocarpus
crouaniorum
Male
Draft genome
Sequencing: Illumina
Ectocarpus
crouaniorum
Female
Draft genome
Sequencing: Illumina
Ectocarpus
fasciculatus
Draft genome
Sequencing: Illumina
Ectocarpus
fasciculatus
Good quality assembly
Sequencing: Illumina, Nanopore
Best genome assembly for the species
Ectocarpus
fasciculatus
Male
Draft genome
Sequencing: Illumina
© D. Scornet CNRS
Ectocarpus
fasciculatus
Female
Good quality assembly
Sequencing: Illumina, Nanopore
Best genome assembly for the species
Ectocarpus
siliculosus
Male
Draft genome
Sequencing: Illumina
© D. Scornet CNRS
Ectocarpus
siliculosus
Female
Draft genome
Sequencing: Illumina
© D. Scornet CNRS
Ectocarpus
species1
Male
Draft genome
Sequencing: Illumina
Best genome assembly for the species
© D. Scornet CNRS
Ectocarpus
species1
Male
Draft genome
Sequencing: Illumina
© D. Scornet CNRS
Ectocarpus
species1
Female
Draft genome
Sequencing: Illumina
Best genome assembly for the species
Ectocarpus
species12
Draft genome
Sequencing: Illumina
Ectocarpus
species12
Female
Draft genome
Sequencing: Illumina
Best genome assembly for the species
Ectocarpus
species13
Draft genome
Sequencing: Illumina
Best genome assembly for the species
© D. Scornet CNRS
Ectocarpus
species2
Male
Draft genome
Sequencing: Illumina
Ectocarpus
species3
Male
Draft genome
Sequencing: Illumina
Best genome assembly for the species
Ectocarpus
species3
Female
Draft genome
Sequencing: Illumina
Ectocarpus
species5
Male
Draft genome
Sequencing: Illumina
Best genome assembly for the species
© D. Scornet CNRS
Ectocarpus
species5
Female
Good quality assembly
Sequencing: Illumina, Nanopore
Best genome assembly for the species
Ectocarpus
species6
Draft genome
Sequencing: Illumina
Best genome assembly for the species
Ectocarpus
species8
Draft genome
Sequencing: Illumina
Best genome assembly for the species
Ectocarpus
species9
Female
Draft genome
Sequencing: Illumina
Best genome assembly for the species
Feldmannia
mitchelliae
Monoicous
Draft genome
Sequencing: Illumina
Best genome assembly for the species
Fucus
distichus
Monoicous
Good quality assembly
Sequencing: Illumina, Nanopore
Best genome assembly for the species
Fucus
serratus
Male
Draft genome
Sequencing: Illumina
Best genome assembly for the species
Halopteris
paniculata
Monoicous
Draft genome
Sequencing: Illumina
Best genome assembly for the species
Hapterophycus
canaliculatus
Male
Draft genome
Sequencing: Illumina
Hapterophycus
canaliculatus
Female
Draft genome
Sequencing: Illumina
Best genome assembly for the species
Heribaudiella
fluviatilis
Good quality assembly
Sequencing: Illumina, Nanopore
Best genome assembly for the species
Heterosigma
akashiwo
Draft genome
Sequencing: Illumina
Best genome assembly for the species
Himanthalia
elongata
Dioecious
Draft genome
Sequencing: Illumina, Nanopore
Best genome assembly for the species
Laminaria
digitata
Male
Draft genome
Sequencing: Illumina
Best genome assembly for the species
Laminarionema
elsbetiae
Draft genome
Sequencing: Illumina
Macrocystis
pyrifera
Male
Draft genome
Sequencing: Illumina
Myriotrichia
clavaeformis
Male
Draft genome
Sequencing: Illumina
Best genome assembly for the species
Myriotrichia
clavaeformis
Female
Draft genome
Sequencing: Illumina
Best genome assembly for the species
Pelvetia
canaliculata
Dioecious
Draft genome
Sequencing: Illumina, Nanopore
Best genome assembly for the species
Phaeothamnion
wetherbeei
Good quality assembly
Sequencing: Illumina, Nanopore
Best genome assembly for the species
Pleurocladia
lacustris
Near chromosome scale assembly
Sequencing: Illumina, Nanopore
Best genome assembly for the species
Porterinema
fluviatile
Good quality assembly
Sequencing: Illumina, Nanopore
Best genome assembly for the species
© D. Scornet CNRS
Pylaiella
littoralis
Good quality assembly
Sequencing: Illumina, PacBio
Best genome assembly for the species
Saccharina
latissima
Female
Draft genome
Sequencing: Illumina
Best genome assembly for the species
Saccorhiza
dermatodea
Monoicous
Draft genome
Sequencing: Illumina
Best genome assembly for the species
© D. Scornet CNRS
Saccorhiza
polyschides
Male
Draft genome
Sequencing: Illumina
Saccorhiza
polyschides
Female
Near chromosome scale assembly
Sequencing: Illumina, Nanopore
Best genome assembly for the species
Schizocladia
ischiensis
Near chromosome scale assembly
Sequencing: Illumina, Nanopore
Best genome assembly for the species
Scytosiphon
promiscuus
Male
Draft genome
Sequencing: Illumina
Scytosiphon
promiscuus
Female
Draft genome
Sequencing: Illumina
Best genome assembly for the species
Sphacelaria
rigidula
Female
Draft genome
Sequencing: Illumina
Sphaerotrichia
firma
Male
Draft genome
Sequencing: Illumina
Best genome assembly for the species
Sphaerotrichia
firma
Female

Upcoming Phaeoexplorer genomes

Hover over icons to view corresponding captions  (  )

Public brown algal genomes analysed in Phaeoexplorer

Hover over icons to view corresponding captions  (  )

Sequencing: Illumina MatePE
© Koki Nishitsuji
Cladosiphon
okamuranus
Sequencing: Sanger
© D. Scornet CNRS
Ectocarpus
species7
Male_plus_femaleSDR
Sequencing: Illumina MatePE
© S. Dittami CNRS
Ectocarpus
subulatus
Male
Sequencing: Illumina MatePE, PacBio
© Naihao Ye
Saccharina
japonica
Sequencing: Illumina PE, PacBio
© Hui-Xi Zou
Sargassum
fusiforme
Sequencing: PacBio + illumina
Tribonema
minus
Sequencing: Illumina, PacBio, genetic-map-based pseudochromosomes
© Hwan Su Yoon
Undaria
pinnatifida