Best Assembly Heribaudiella fluviatilis

Draft genome

AlgaeBase

GGA

GGA

ncbi

Description


  • Genus: Heribaudiella
  • Species: fluviatilis
  • Strain: SAG 13.90
  • Sex: Unknown
  • Ploidy: Unknown
  • Common name: No common name known

Resources

Assembly

  • Sequencing: Illumina
  • Size: 377.63 Mbp
  • Number of contigs: 124447
  • GC content: 51.5%
  • N content: 0.12%
  • N50: 5.78 Kbp
  • L50: 16125

Annotation

  • Protein-coding genes: 41302
  • Gene length (average): 2239.49
  • Gene length (median): 1070.0
  • CDS length (average): 706.69
  • CDS length (median): 480.0
  • CDS proportion (genome): 0.073%
  • Genes without introns: 8994
  • Number of contigs with at least one gene (genome): 23.2%
  • Number of contigs with at least one gene (bases): 48.0%

BUSCO results

Genome

  • Single-copy genes: 109
  • Duplicated genes: 5
  • Fragmented genes: 58
  • Missing genes: 131

Proteins

  • Single-copy genes: 186
  • Duplicated genes: 63
  • Fragmented genes: 44
  • Missing genes: 10