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Best Assembly Sphaerotrichia firma (Female)

Draft genome

AlgaeBase

Worms

GGA

GGA

ncbi

Description


  • Genus: Sphaerotrichia
  • Species: firma
  • Strain: ET2 F
  • Sex: Female
  • Ploidy: Haploid
  • Common name: No common name known

Resources

Assembly

  • Sequencing: Illumina
  • Size: 189.57 Mbp
  • Number of contigs: 40448
  • GC content: 56.1%
  • N content: 0.10%
  • N50: 10.71 Kbp
  • L50: 4592

Annotation

  • Protein-coding genes: 27957
  • Gene length (average): 3149.44
  • Gene length (median): 1821.0
  • CDS length (average): 1123.65
  • CDS length (median): 768.0
  • CDS proportion (genome): 0.156%
  • Genes without introns: 6738
  • Number of contigs with at least one gene (genome): 35.8%
  • Number of contigs with at least one gene (bases): 72.6%

BUSCO results

Genome

  • Single-copy genes: 216
  • Duplicated genes: 24
  • Fragmented genes: 32
  • Missing genes: 31

Proteins

  • Single-copy genes: 187
  • Duplicated genes: 78
  • Fragmented genes: 30
  • Missing genes: 8

Additional genome assemblies for this species