Ectocarpus species6
Good quality assembly
Description
- Genus: Ectocarpus
- Species: species6
- Strain: EcLAC-371
- Sex: Unknown
- Ploidy: Diploid
- Common name: No common name known
Resources
- Genome browser ↵
- Genome database ↵
- AlgaeBase (Not yet available)
- WORMS (Not yet available)
- NCBI ↵
- Roscoff Culture Collection ↵
Assembly
- Sequencing: Illumina, Nanopore
- Size: 214.46 Mbp
- Number of contigs: 434
- GC content: 53.4%
- N content: 0%
- N50: 1.35 Mbp
- L50: 47
Annotation
- Protein-coding genes: 18873
- Gene length (average): 6788.38
- Gene length (median): 5242.0
- CDS length (average): 1510.96
- CDS length (median): 1113.0
- CDS proportion (genome): 0.133%
- Genes without introns: 2520
- Number of contigs with at least one gene (genome): 92.9%
- Number of contigs with at least one gene (bases): 99.1%
BUSCO results
Genome
- Single-copy genes: 221
- Duplicated genes: 14
- Fragmented genes: 12
- Missing genes: 56
Proteins
- Single-copy genes: 258
- Duplicated genes: 18
- Fragmented genes: 14
- Missing genes: 13