Best Assembly Ectocarpus species2 (Male)

Draft genome

Description


  • Genus: Ectocarpus
  • Species: species2
  • Strain: Ec06m (Ec sil Vic88 12-11m)
  • Sex: Male
  • Ploidy: Haploid
  • Common name: No common name known

Resources

Assembly

  • Sequencing: Illumina
  • Size: 174.92 Mbp
  • Number of contigs: 32144
  • GC content: 53.3%
  • N content: 0%
  • N50: 12.29 Kbp
  • L50: 4087

Annotation

  • Protein-coding genes: 16843
  • Gene length (average): 4246.32
  • Gene length (median): 3309.0
  • CDS length (average): 1144.23
  • CDS length (median): 786.0
  • CDS proportion (genome): 9.6%
  • Genes without introns: 3278
  • Number of contigs with at least one gene (genome): 25.8%
  • Number of contigs with at least one gene (bases): 62.5%

BUSCO results

Genome

  • Single-copy genes: 172
  • Duplicated genes: 9
  • Fragmented genes: 50
  • Missing genes: 72

Proteins

  • Single-copy genes: 194
  • Duplicated genes: 5
  • Fragmented genes: 65
  • Missing genes: 39