Best Assembly Pylaiella littoralis

Good quality assembly

Description


  • Genus: Pylaiella
  • Species: littoralis
  • Strain: U1.48
  • Sex: Unknown
  • Ploidy: Haploid
  • Common name: Mung

Resources

Assembly

  • Sequencing: Illumina, Nanopore
  • Size: 307.53 Mbp
  • Number of contigs: 1708
  • GC content: 51.4%
  • N content: 0%
  • N50: 344.68 Kbp
  • L50: 274

Annotation

  • Protein-coding genes: 22501
  • Gene length (average): 8153.52
  • Gene length (median): 4525.0
  • CDS length (average): 1309.47
  • CDS length (median): 798.0
  • CDS proportion (genome): 0.091%
  • Genes without introns: 5559
  • Number of contigs with at least one gene (genome): 89.1%
  • Number of contigs with at least one gene (bases): 99.2%

BUSCO results

Genome

  • Single-copy genes: 218
  • Duplicated genes: 4
  • Fragmented genes: 17
  • Missing genes: 64

Proteins

  • Single-copy genes: 276
  • Duplicated genes: 3
  • Fragmented genes: 9
  • Missing genes: 15