Ectocarpus siliculosus (Male)
Good quality assembly
Description
- Genus: Ectocarpus
- Species: siliculosus
- Strain: Ec864m (EcPH12-78m)
- Sex: Male
- Ploidy: Haploid
- Common name: No common name known
Resources
World occurrences (from GBIF)
Assembly
- Sequencing: Illumina, Nanopore
- Size: 200.17 Mbp
- Number of contigs: 1633
- GC content: 53.4%
- N content: 0%
- N50: 852.57 Kbp
- L50: 70
Annotation
- Protein-coding genes: 17801
- Gene length (average): 7436.45
- Gene length (median): 5724.0
- CDS length (average): 1631.23
- CDS length (median): 1194.0
- CDS proportion (genome): 14.5%
- Genes without introns: 2466
- Number of contigs with at least one gene (genome): 41.0%
- Number of contigs with at least one gene (bases): 96.9%
BUSCO results (BUSCO v5 with eukaryota_odb10)
Genome
- Single-copy genes: 192
- Duplicated genes: 1
- Fragmented genes: 35
- Missing genes: 27
Proteins
- Single-copy genes: 222
- Duplicated genes: 1
- Fragmented genes: 11
- Missing genes: 21
Additional genome assemblies for this species
-
Ectocarpus siliculosus Ec863f (EcPH12-90f) Female
Sequencing: Illumina, Nanopore
Good quality assembly