You are viewing   Best Assembly  Ectocarpus siliculosus Ec864m (EcPH12-78m) Male , to access additional genome assemblies for this species, click here

Note that the reference genome strain (originally Ectocarpus siliculosus) is now called Ectocarpus species7

Best Assembly Ectocarpus siliculosus (Male)

Good quality assembly

AlgaeBase

Worms

GGA

GGA

ncbi

Description


  • Genus: Ectocarpus
  • Species: siliculosus
  • Strain: Ec864m (EcPH12-78m)
  • Sex: Male
  • Ploidy: Haploid
  • Common name: No common name known

Resources

World occurrences (from GBIF)

Assembly

  • Sequencing: Illumina, Nanopore
  • Size: 200.17 Mbp
  • Number of contigs: 1633
  • GC content: 53.4%
  • N content: 0%
  • N50: 852.57 Kbp
  • L50: 70

Annotation

  • Protein-coding genes: 17801
  • Gene length (average): 7436.45
  • Gene length (median): 5724.0
  • CDS length (average): 1631.23
  • CDS length (median): 1194.0
  • CDS proportion (genome): 0.145%
  • Genes without introns: 2466
  • Number of contigs with at least one gene (genome): 41.0%
  • Number of contigs with at least one gene (bases): 96.9%

BUSCO results

Genome

  • Single-copy genes: 233
  • Duplicated genes: 4
  • Fragmented genes: 15
  • Missing genes: 51

Proteins

  • Single-copy genes: 278
  • Duplicated genes: 7
  • Fragmented genes: 10
  • Missing genes: 8

Additional genome assemblies for this species

< !-- World occurences map, based on example found at https://tile.gbif.org/ui/4326/leaflet.html -- >