Note that this is the reference genome strain (was originally referred to as Ectocarpus siliculosus)

Ectocarpus species7

Description


  • Genus: Ectocarpus
  • Species: species7
  • Strain: Ec32
  • Sex: Male_plus_femaleSDR
  • Ploidy: Haploid
  • Common name: No common name known

Resources

Assembly

  • Sequencing: Sanger
  • Size: 187.69 Mbp
  • Number of contigs: 30
  • GC content: 53.5%
  • N content: 0%
  • N50: 6.23 Mbp
  • L50: 12 bp

Annotation

  • Protein-coding genes: 16709
  • Gene length (average): 8799.85
  • Gene length (median): 6976.0
  • CDS length (average): 1610.39
  • CDS length (median): 1119.0
  • CDS proportion (genome): 0.198%
  • Genes without introns: 1400
  • Number of contigs with at least one gene (genome): 100.0%
  • Number of contigs with at least one gene (bases): 100.0%

BUSCO results

Genome

  • Single-copy genes: 231
  • Duplicated genes: 2
  • Fragmented genes: 22
  • Missing genes: 48

Proteins

  • Single-copy genes: 249
  • Duplicated genes: 29
  • Fragmented genes: 11
  • Missing genes: 14