Ectocarpus species5
(Female)
Draft genome
Description
- Genus: Ectocarpus
- Species: species5
- Strain: Ec13f (Ec sil Jap16 a-8 f)
- Sex: Female
- Ploidy: Haploid
- Common name: No common name known
Resources
- Genome browser ↵
- Genome database ↵
- AlgaeBase (Not yet available)
- WORMS (Not yet available)
- NCBI ↵
- Roscoff Culture Collection ↵
Assembly
- Sequencing: Illumina
- Size: 176.79 Mbp
- Number of contigs: 28565
- GC content: 53.7%
- N content: 0%
- N50: 16.34 Kbp
- L50: 2994
Annotation
- Protein-coding genes: 17193
- Gene length (average): 4661.8
- Gene length (median): 3639.0
- CDS length (average): 1257.15
- CDS length (median): 873.0
- CDS proportion (genome): 12.1%
- Genes without introns: 2972
- Number of contigs with at least one gene (genome): 31.4%
- Number of contigs with at least one gene (bases): 73.7%
BUSCO results
Genome
- Single-copy genes: 195
- Duplicated genes: 0
- Fragmented genes: 46
- Missing genes: 62
Proteins
- Single-copy genes: 218
- Duplicated genes: 4
- Fragmented genes: 49
- Missing genes: 32
Additional genome assemblies for this species
-
Ectocarpus species5 Ec12m (Ec sil Jap16 a-1 m) Male
Sequencing: Illumina
Draft genome