Ectocarpus species5 (Male)
Draft genome
Description
- Genus: Ectocarpus
- Species: species5
- Strain: Ec12m (Ec sil Jap16 a-1 m)
- Sex: Male
- Ploidy: Haploid
- Common name: No common name known
Resources
- Genome browser ↵
- Genome database ↵
- AlgaeBase (Not yet available)
- WORMS (Not yet available)
- NCBI ↵
- Roscoff Culture Collection ↵
Assembly
- Sequencing: Illumina
- Size: 159.88 Mbp
- Number of contigs: 45536
- GC content: 53.7%
- N content: 0%
- N50: 5.53 Kbp
- L50: 8318
Annotation
- Protein-coding genes: 20082
- Gene length (average): 2579.36
- Gene length (median): 1735.0
- CDS length (average): 818.83
- CDS length (median): 531.0
- CDS proportion (genome): 0.102%
- Genes without introns: 5505
- Number of contigs with at least one gene (genome): 34.2%
- Number of contigs with at least one gene (bases): 56.9%
BUSCO results
Genome
- Single-copy genes: 114
- Duplicated genes: 1
- Fragmented genes: 106
- Missing genes: 82
Proteins
- Single-copy genes: 136
- Duplicated genes: 3
- Fragmented genes: 101
- Missing genes: 63
Additional genome assemblies for this species
-
Ectocarpus species5 Ec13f (Ec sil Jap16 a-8 f) Female
Best genome assembly for the species
Sequencing: Illumina
Draft genome