Best Assembly Choristocarpus tenellus

Draft genome

AlgaeBase

Worms

GGA

GGA

ncbi

Description


  • Genus: Choristocarpus
  • Species: tenellus
  • Strain: KU2346
  • Sex: Unknown
  • Ploidy: Unknown
  • Common name: No common name known
© D. Scornet CNRS

Resources

Assembly

  • Sequencing: Illumina, Nanopore
  • Size: 156.39 Mbp
  • Number of contigs: 27308
  • GC content: 43.9%
  • N content: 0%
  • N50: 6.62 Kbp
  • L50: 7369

Annotation

  • Protein-coding genes: 13635
  • Gene length (average): 2850.55
  • Gene length (median): 2032.0
  • CDS length (average): 744.61
  • CDS length (median): 519.0
  • CDS proportion (genome): 0.062%
  • Genes without introns: 3189
  • Number of contigs with at least one gene (genome): 38.1%
  • Number of contigs with at least one gene (bases): 50.1%

BUSCO results

Genome

  • Single-copy genes: 94
  • Duplicated genes: 1
  • Fragmented genes: 71
  • Missing genes: 137

Proteins

  • Single-copy genes: 124
  • Duplicated genes: 7
  • Fragmented genes: 94
  • Missing genes: 78