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Best Assembly Saccorhiza polyschides (Male)

Draft genome

AlgaeBase

Worms

GGA

GGA

ncbi

Description


  • Genus: Saccorhiza
  • Species: polyschides
  • Strain: SpolBR94m
  • Sex: Male
  • Ploidy: Haploid
  • Common name: Furbellow
© D. Scornet CNRS

Resources

World occurrences (from GBIF)

Assembly

  • Sequencing: Illumina
  • Size: 557.45 Mbp
  • Number of contigs: 138132
  • GC content: 49.9%
  • N content: 0%
  • N50: 11.64 Kbp
  • L50: 11919

Annotation

  • Protein-coding genes: 19747
  • Gene length (average): 3914.43
  • Gene length (median): 1997.0
  • CDS length (average): 816.07
  • CDS length (median): 489.0
  • CDS proportion (genome): 0.029%
  • Genes without introns: 6768
  • Number of contigs with at least one gene (genome): 9.8%
  • Number of contigs with at least one gene (bases): 32.8%

BUSCO results

Genome

  • Single-copy genes: 118
  • Duplicated genes: 2
  • Fragmented genes: 90
  • Missing genes: 93

Proteins

  • Single-copy genes: 155
  • Duplicated genes: 6
  • Fragmented genes: 87
  • Missing genes: 55

Additional genome assemblies for this species

< !-- World occurences map, based on example found at https://tile.gbif.org/ui/4326/leaflet.html -- >