Best Assembly Schizocladia ischiensis

Near chromosome scale assembly

Description


  • Genus: Schizocladia
  • Species: ischiensis
  • Strain: KU-0333
  • Sex: Unknown
  • Ploidy: Unknown
  • Common name: No common name known

Resources

Assembly

  • Sequencing: Illumina, Nanopore
  • Size: 185.5 Mbp
  • Number of contigs: 130
  • GC content: 57.0%
  • N content: 0%
  • N50: 2.41 Mbp
  • L50: 26

Annotation

  • Protein-coding genes: 21187
  • Gene length (average): 5065.12
  • Gene length (median): 2875.0
  • CDS length (average): 857.41
  • CDS length (median): 615.0
  • CDS proportion (genome): 0.093%
  • Genes without introns: 4473
  • Number of contigs with at least one gene (genome): 99.2%
  • Number of contigs with at least one gene (bases): 100.0%

BUSCO results

Genome

  • Single-copy genes: 220
  • Duplicated genes: 4
  • Fragmented genes: 33
  • Missing genes: 46

Proteins

  • Single-copy genes: 223
  • Duplicated genes: 16
  • Fragmented genes: 36
  • Missing genes: 28