Ectocarpus species12 (Female)
Draft genome
Description
- Genus: Ectocarpus
- Species: species12
- Strain: Ec fas CH92 Nie 2f
- Sex: Female
- Ploidy: Diploid
- Common name: No common name known
Resources
- Genome browser ↵
- Genome database ↵
- AlgaeBase (Not yet available)
- WORMS (Not yet available)
- NCBI ↵
- Roscoff Culture Collection ↵
Assembly
- Sequencing: Illumina
- Size: 379.91 Mbp
- Number of contigs: 90668
- GC content: 53.4%
- N content: 0%
- N50: 9.79 Kbp
- L50: 10414
Annotation
- Protein-coding genes: 38530
- Gene length (average): 3445.15
- Gene length (median): 2143.0
- CDS length (average): 924.69
- CDS length (median): 585.0
- CDS proportion (genome): 0.091%
- Genes without introns: 10255
- Number of contigs with at least one gene (genome): 25.0%
- Number of contigs with at least one gene (bases): 60.6%
BUSCO results
Genome
- Single-copy genes: 129
- Duplicated genes: 48
- Fragmented genes: 51
- Missing genes: 75
Proteins
- Single-copy genes: 165
- Duplicated genes: 3
- Fragmented genes: 76
- Missing genes: 59
Additional genome assemblies for this species
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Ectocarpus species12 Ec fas CH92 Nie 3
Best genome assembly for the species
Sequencing: Illumina
Draft genome