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Best Assembly Ectocarpus species12

Draft genome

GGA

GGA

ncbi

Description


  • Genus: Ectocarpus
  • Species: species12
  • Strain: Ec fas CH92 Nie 3
  • Sex: Unknown
  • Ploidy: Diploid
  • Common name: No common name known

Resources

Assembly

  • Sequencing: Illumina
  • Size: 358.1 Mbp
  • Number of contigs: 85357
  • GC content: 53.2%
  • N content: 0%
  • N50: 9.04 Kbp
  • L50: 11090

Annotation

  • Protein-coding genes: 48353
  • Gene length (average): 2688.58
  • Gene length (median): 1164.0
  • CDS length (average): 835.29
  • CDS length (median): 558.0
  • CDS proportion (genome): 0.108%
  • Genes without introns: 21099
  • Number of contigs with at least one gene (genome): 38.6%
  • Number of contigs with at least one gene (bases): 62.9%

BUSCO results

Genome

  • Single-copy genes: 126
  • Duplicated genes: 33
  • Fragmented genes: 59
  • Missing genes: 85

Proteins

  • Single-copy genes: 156
  • Duplicated genes: 69
  • Fragmented genes: 61
  • Missing genes: 17

Additional genome assemblies for this species