Best Assembly Porterinema fluviatile

Near chromosome scale assembly

Description


  • Genus: Porterinema
  • Species: fluviatile
  • Strain: SAG 2381
  • Sex: Unknown
  • Ploidy: Unknown
  • Common name: No common name known

Resources

Assembly

  • Sequencing: Illumina, Nanopore
  • Size: 159.45 Mbp
  • Number of contigs: 110
  • GC content: 54.5%
  • N content: 0%
  • N50: 2.5 Mbp
  • L50: 22

Annotation

  • Protein-coding genes: 15519
  • Gene length (average): 7162.46
  • Gene length (median): 5405.0
  • CDS length (average): 1492.35
  • CDS length (median): 1092.0
  • CDS proportion (genome): 0.139%
  • Genes without introns: 2449
  • Number of contigs with at least one gene (genome): 99.1%
  • Number of contigs with at least one gene (bases): 100.0%

BUSCO results

Genome

  • Single-copy genes: 226
  • Duplicated genes: 3
  • Fragmented genes: 24
  • Missing genes: 50

Proteins

  • Single-copy genes: 266
  • Duplicated genes: 4
  • Fragmented genes: 21
  • Missing genes: 12