Porterinema fluviatile
Near chromosome scale assembly
Description
- Genus: Porterinema
- Species: fluviatile
- Strain: SAG 2381
- Sex: Unknown
- Ploidy: Unknown
- Common name: No common name known
Resources
World occurrences (from GBIF)
Assembly
- Sequencing: Illumina, Nanopore
- Size: 167.19 Mbp
- Number of contigs: 110
- GC content: 54.5%
- N content: 0%
- N50: 2.62 Mbp
- L50: 22
Annotation
- Protein-coding genes: 15519
- Gene length (average): 7162.46
- Gene length (median): 5405.0
- CDS length (average): 1492.35
- CDS length (median): 1092.0
- CDS proportion (genome): 0.139%
- Genes without introns: 2449
- Number of contigs with at least one gene (genome): 99.1%
- Number of contigs with at least one gene (bases): 100.0%
BUSCO results
Genome
- Single-copy genes: 226
- Duplicated genes: 3
- Fragmented genes: 24
- Missing genes: 50
Proteins
- Single-copy genes: 266
- Duplicated genes: 4
- Fragmented genes: 21
- Missing genes: 12