Himanthalia elongata
Draft genome
Description
- Genus: Himanthalia
- Species: elongata
- Strain: Himel1
- Sex: Dioecious
- Ploidy: Diploid
- Common name: No common name known
Resources
- Genome browser ↵
- Genome database ↵
- AlgaeBase ↵
- WORMS ↵
- NCBI ↵
- Roscoff Culture Collection (Not yet available)
Assembly
- Sequencing: Illumina
- Size: 749.07 Mbp
- Number of contigs: 325257
- GC content: 47.3%
- N content: 0%
- N50: 3.76 Kbp
- L50: 55511
Annotation
- Protein-coding genes: 17308
- Gene length (average): 1978.24
- Gene length (median): 1078.0
- CDS length (average): 686.22
- CDS length (median): 432.0
- CDS proportion (genome): 0.015%
- Genes without introns: 6120
- Number of contigs with at least one gene (genome): 4.9%
- Number of contigs with at least one gene (bases): 10.3%
BUSCO results
Genome
- Single-copy genes: 83
- Duplicated genes: 2
- Fragmented genes: 99
- Missing genes: 119
Proteins
- Single-copy genes: 116
- Duplicated genes: 3
- Fragmented genes: 127
- Missing genes: 57