You are viewing Ectocarpus species1 Ec03m (Ec sil NZ88 15d2mv) Male , to access additional genome assemblies for this species, click here

Ectocarpus species1 (Male)

Draft genome

ncbi

Description


  • Genus: Ectocarpus
  • Species: species1
  • Strain: Ec03m (Ec sil NZ88 15d2mv)
  • Sex: Male
  • Ploidy: Haploid
  • Common name: No common name known
© D. Scornet CNRS

Resources

Assembly

  • Sequencing: Illumina
  • Size: 181.38 Mbp
  • Number of contigs: 23044
  • GC content: 53.5%
  • N content: 0%
  • N50: 23.18 Kbp
  • L50: 2316

Annotation

  • Protein-coding genes: 19620
  • Gene length (average): 4782.15
  • Gene length (median): 3542.0
  • CDS length (average): 1257.72
  • CDS length (median): 825.0
  • CDS proportion (genome): 12.9%
  • Genes without introns: 4755
  • Number of contigs with at least one gene (genome): 35.4%
  • Number of contigs with at least one gene (bases): 80.4%

BUSCO results

Genome

  • Single-copy genes: 195
  • Duplicated genes: 4
  • Fragmented genes: 47
  • Missing genes: 57

Proteins

  • Single-copy genes: 212
  • Duplicated genes: 7
  • Fragmented genes: 47
  • Missing genes: 37

Additional genome assemblies for this species