Ectocarpus species1 (Male)
Draft genome
Description
- Genus: Ectocarpus
- Species: species1
- Strain: Ec03m (Ec sil NZ88 15d2mv)
- Sex: Male
- Ploidy: Haploid
- Common name: No common name known
Resources
- Genome browser (Not yet available)
- GGA: Galaxy Genome Annotation (Not yet available)
- AlgaeBase (Not yet available)
- WORMS (Not yet available)
- NCBI ↵
- Roscoff Culture Collection ↵
- Other collection ↵
Assembly
- Sequencing: Illumina
- Size: 190.19 Mbp
- Number of contigs: 23044
- GC content: 53.5%
- N content: 0%
- N50: 23.74 Kbp
- L50: 2316
Annotation
- Protein-coding genes: 19620
- Gene length (average): 4782.15
- Gene length (median): 3542.0
- CDS length (average): 1257.72
- CDS length (median): 825.0
- CDS proportion (genome): 12.9%
- Genes without introns: 4755
- Number of contigs with at least one gene (genome): 35.4%
- Number of contigs with at least one gene (bases): 80.4%
BUSCO results
Genome
- Single-copy genes: 195
- Duplicated genes: 4
- Fragmented genes: 47
- Missing genes: 57
Proteins
- Single-copy genes: 212
- Duplicated genes: 7
- Fragmented genes: 47
- Missing genes: 37
Additional genome assemblies for this species
-
Ectocarpus species1 Ec sil Puy CHCH Z9 G3m Male
Best genome assembly for the species
Sequencing: Illumina
Draft genome -
Ectocarpus species1 Ec sil Puy CHCH Z9 G5f Female
Sequencing: Illumina
Draft genome