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Best Assembly Ectocarpus species1 (Male)

Draft genome

GGA

GGA

ncbi

Description


  • Genus: Ectocarpus
  • Species: species1
  • Strain: Ec sil Puy CHCH Z9 G3m
  • Sex: Male
  • Ploidy: Haploid
  • Common name: No common name known
© D. Scornet CNRS

Resources

Assembly

  • Sequencing: Illumina
  • Size: 188.2 Mbp
  • Number of contigs: 23128
  • GC content: 53.5%
  • N content: 0%
  • N50: 24.93 Kbp
  • L50: 2129

Annotation

  • Protein-coding genes: 18068
  • Gene length (average): 5334.46
  • Gene length (median): 4210.0
  • CDS length (average): 1330.69
  • CDS length (median): 924.0
  • CDS proportion (genome): 11.6%
  • Genes without introns: 3707
  • Number of contigs with at least one gene (genome): 19.3%
  • Number of contigs with at least one gene (bases): 74.2%

BUSCO results

Genome

  • Single-copy genes: 197
  • Duplicated genes: 7
  • Fragmented genes: 38
  • Missing genes: 61

Proteins

  • Single-copy genes: 221
  • Duplicated genes: 5
  • Fragmented genes: 37
  • Missing genes: 40

Additional genome assemblies for this species

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