Ectocarpus fasciculatus
Draft genome
Description
- Genus: Ectocarpus
- Species: fasciculatus
- Strain: EfasUO1
- Sex: Unknown
- Ploidy: Diploid
- Common name: No common name known
Resources
- Genome browser (Not yet available)
- GGA: Galaxy Genome Annotation (Not yet available)
- AlgaeBase (Not yet available)
- WORMS (Not yet available)
- NCBI ↵
- Roscoff Culture Collection ↵
- Other collection ↵
World occurrences (from GBIF)
Assembly
- Sequencing: Illumina
- Size: 232.43 Mbp
- Number of contigs: 46543
- GC content: 52.8%
- N content: 0%
- N50: 12.13 Kbp
- L50: 4574
Annotation
- Protein-coding genes: 22946
- Gene length (average): 3414.1
- Gene length (median): 2244.0
- CDS length (average): 1164.55
- CDS length (median): 831.0
- CDS proportion (genome): 11.2%
- Genes without introns: 5577
- Number of contigs with at least one gene (genome): 23.8%
- Number of contigs with at least one gene (bases): 65.6%
BUSCO results
Genome
- Single-copy genes: 221
- Duplicated genes: 38
- Fragmented genes: 15
- Missing genes: 29
Proteins
- Single-copy genes: 184
- Duplicated genes: 77
- Fragmented genes: 24
- Missing genes: 18
Additional genome assemblies for this species
-
Ectocarpus fasciculatus Ec846f (Ec191 B4 f) Female
Sequencing: Illumina
Draft genome -
Ectocarpus fasciculatus Ec847m (Ec191 A9 m) Male
Best genome assembly for the species
Sequencing: Illumina
Draft genome -
Ectocarpus fasciculatus EfasUO2
Sequencing: Illumina
Draft genome