Ectocarpus fasciculatus
Draft genome
Description
- Genus: Ectocarpus
- Species: fasciculatus
- Strain: EfasUO2
- Sex: Unknown
- Ploidy: Diploid
- Common name: No common name known
Resources
- Genome browser (Not yet available)
- GGA: Galaxy Genome Annotation (Not yet available)
- AlgaeBase (Not yet available)
- WORMS (Not yet available)
- NCBI ↵
- Roscoff Culture Collection ↵
- Other collection ↵
World occurrences (from GBIF)
Assembly
- Sequencing: Illumina
- Size: 196.36 Mbp
- Number of contigs: 42570
- GC content: 53.4%
- N content: 0%
- N50: 10.42 Kbp
- L50: 4979
Annotation
- Protein-coding genes: 17977
- Gene length (average): 3833.34
- Gene length (median): 2883.0
- CDS length (average): 1107.21
- CDS length (median): 741.0
- CDS proportion (genome): 9.4%
- Genes without introns: 3378
- Number of contigs with at least one gene (genome): 23.8%
- Number of contigs with at least one gene (bases): 58.6%
BUSCO results
Genome
- Single-copy genes: 173
- Duplicated genes: 3
- Fragmented genes: 67
- Missing genes: 60
Proteins
- Single-copy genes: 189
- Duplicated genes: 6
- Fragmented genes: 72
- Missing genes: 36
Additional genome assemblies for this species
-
Ectocarpus fasciculatus Ec846f (Ec191 B4 f) Female
Sequencing: Illumina
Draft genome -
Ectocarpus fasciculatus Ec847m (Ec191 A9 m) Male
Best genome assembly for the species
Sequencing: Illumina
Draft genome -
Ectocarpus fasciculatus EfasUO1
Sequencing: Illumina
Draft genome