You are viewing   Best Assembly  Ectocarpus crouaniorum Ec862m (EcPH12-21m) Male , to access additional genome assemblies for this species, click here

Best Assembly Ectocarpus crouaniorum (Male)

Near chromosome scale assembly

AlgaeBase

Worms

GGA

GGA

ncbi

Description


  • Genus: Ectocarpus
  • Species: crouaniorum
  • Strain: Ec862m (EcPH12-21m)
  • Sex: Male
  • Ploidy: Haploid
  • Common name: No common name known
© D. Scornet CNRS

Resources

World occurrences (from GBIF)

Assembly

  • Sequencing: Illumina, Nanopore
  • Size: 218.47 Mbp
  • Number of contigs: 275
  • GC content: 53.2%
  • N content: 0%
  • N50: 3.91 Mbp
  • L50: 21

Annotation

  • Protein-coding genes: 17770
  • Gene length (average): 7713.95
  • Gene length (median): 5909.0
  • CDS length (average): 1612.67
  • CDS length (median): 1179.0
  • CDS proportion (genome): 0.131%
  • Genes without introns: 2327
  • Number of contigs with at least one gene (genome): 68.0%
  • Number of contigs with at least one gene (bases): 98.8%

BUSCO results

Genome

  • Single-copy genes: 230
  • Duplicated genes: 5
  • Fragmented genes: 13
  • Missing genes: 55

Proteins

  • Single-copy genes: 273
  • Duplicated genes: 7
  • Fragmented genes: 14
  • Missing genes: 9

Additional genome assemblies for this species

< !-- World occurences map, based on example found at https://tile.gbif.org/ui/4326/leaflet.html -- >