Saccharina japonica
Description
- Genus: Saccharina
- Species: japonica
- Strain: Unknown strain
- Sex: Unknown
- Ploidy: Diploid
- Common name: kombu
Resources
- Genome browser (Not yet available)
- GGA: Galaxy Genome Annotation (Not yet available)
- AlgaeBase ↵
- WORMS ↵
- NCBI ↵
- Roscoff Culture Collection (Not yet available)
- Publications:
World occurrences (from GBIF)
Assembly
- Sequencing: Illumina MatePE, PacBio
- Size: 548.54 Mbp
- Number of contigs: 32
- GC content: 49.6%
- N content: 0.17%
- N50: 15.13 Mbp
- L50: 6
Annotation
- Protein-coding genes: 18732
- Gene length (average): 9588.62
- Gene length (median): 6627.0
- CDS length (average): 1657.5
- CDS length (median): 1252.0
- CDS proportion (genome): 0.056%
- Genes without introns: 2802
- Number of contigs with at least one gene (genome): 100.0%
- Number of contigs with at least one gene (bases): 100.0%
BUSCO results
Genome
- Single-copy genes: 210
- Duplicated genes: 3
- Fragmented genes: 23
- Missing genes: 67
Proteins
- Single-copy genes: 237
- Duplicated genes: 8
- Fragmented genes: 29
- Missing genes: 29