Undaria pinnatifida
Description
- Genus: Undaria
- Species: pinnatifida
- Strain: Kr2015
- Sex: Unknown
- Ploidy: Diploid
- Common name: Wakame
Resources
- Genome browser (Not yet available)
- GGA: Galaxy Genome Annotation (Not yet available)
- AlgaeBase ↵
- WORMS ↵
- NCBI ↵
- Roscoff Culture Collection (Not yet available)
- Publications:
World occurrences (from GBIF)
Assembly
- Sequencing: Illumina, PacBio, genetic-map-based pseudochromosomes
- Size: 634.55 Mbp
- Number of contigs: 33
- GC content: 0%
- N content: 60.1%
- N50: 16.68 Mbp
- L50: 8
Annotation
- Protein-coding genes: 20716
- Gene length (average): 11125.64
- Gene length (median): 8092.5
- CDS length (average): 1343.43
- CDS length (median): 998.5
- CDS proportion (genome): 0.0438%
- Genes without introns: 281
- Number of contigs with at least one gene (genome): 93.93%
- Number of contigs with at least one gene (bases): 99.97%
BUSCO results
Genome
- Single-copy genes: 220
- Duplicated genes: 0
- Fragmented genes: 12
- Missing genes: 71
Proteins
- Single-copy genes: 239
- Duplicated genes: 8
- Fragmented genes: 23
- Missing genes: 33