Heterosigma akashiwo
Good quality assembly
Description
- Genus: Heterosigma
- Species: akashiwo
- Strain: CCMP452
- Sex: Unknown
- Ploidy: Unknown
- Common name: No common name known
Resources
- Genome browser ↵
- Genome database ↵
- AlgaeBase ↵
- WORMS ↵
- NCBI ↵
- Roscoff Culture Collection (Not yet available)
Assembly
- Sequencing: Illumina, Nanopore
- Size: 1.42 Gbp
- Number of contigs: 4933
- GC content: 47.0%
- N content: 0%
- N50: 701.65 Kbp
- L50: 506
Annotation
- Protein-coding genes: 15415
- Gene length (average): 7663.59
- Gene length (median): 1257.0
- CDS length (average): 633.69
- CDS length (median): 462.0
- CDS proportion (genome): 0.06%
- Genes without introns: 5802
- Number of contigs with at least one gene (genome): 66.8%
- Number of contigs with at least one gene (bases): 93.6%
BUSCO results
Genome
- Single-copy genes: 135
- Duplicated genes: 30
- Fragmented genes: 25
- Missing genes: 113
Proteins
- Single-copy genes: 110
- Duplicated genes: 16
- Fragmented genes: 66
- Missing genes: 111