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Best Assembly Desmarestia herbacea (Male)

Good quality assembly

AlgaeBase

Worms

GGA

GGA

ncbi

Description


  • Genus: Desmarestia
  • Species: herbacea
  • Strain: DmunM
  • Sex: Male
  • Ploidy: Haploid
  • Common name: No common name known

Resources

World occurrences (from GBIF)

Assembly

  • Sequencing: Illumina, Nanopore
  • Size: 430.88 Mbp
  • Number of contigs: 1483
  • GC content: 48.1%
  • N content: 0%
  • N50: 897.97 Kbp
  • L50: 142

Annotation

  • Protein-coding genes: 16271
  • Gene length (average): 12220.26
  • Gene length (median): 8244.0
  • CDS length (average): 1477.44
  • CDS length (median): 1122.0
  • CDS proportion (genome): 0.05%
  • Genes without introns: 2561
  • Number of contigs with at least one gene (genome): 54.9%
  • Number of contigs with at least one gene (bases): 95.1%

BUSCO results

Genome

  • Single-copy genes: 216
  • Duplicated genes: 3
  • Fragmented genes: 20
  • Missing genes: 64

Proteins

  • Single-copy genes: 269
  • Duplicated genes: 8
  • Fragmented genes: 18
  • Missing genes: 8

Additional genome assemblies for this species

< !-- World occurences map, based on example found at https://tile.gbif.org/ui/4326/leaflet.html -- >