Best Assembly Halopteris paniculata

Draft genome

AlgaeBase

Worms

GGA

GGA

ncbi

Description


  • Genus: Halopteris
  • Species: paniculata
  • Strain: Hal grac a UBK
  • Sex: Monoicous
  • Ploidy: Unknown
  • Common name: No common name known

Resources

Assembly

  • Sequencing: Illumina
  • Size: 334.37 Mbp
  • Number of contigs: 83026
  • GC content: 48.3%
  • N content: 0%
  • N50: 9.3 Kbp
  • L50: 9533

Annotation

  • Protein-coding genes: 17571
  • Gene length (average): 4858.59
  • Gene length (median): 2901.0
  • CDS length (average): 997.12
  • CDS length (median): 603.0
  • CDS proportion (genome): 0.05%
  • Genes without introns: 4769
  • Number of contigs with at least one gene (genome): 15.5%
  • Number of contigs with at least one gene (bases): 46.0%

BUSCO results

Genome

  • Single-copy genes: 144
  • Duplicated genes: 2
  • Fragmented genes: 76
  • Missing genes: 81

Proteins

  • Single-copy genes: 167
  • Duplicated genes: 7
  • Fragmented genes: 79
  • Missing genes: 50