Best Assembly Dictyota dichotoma (Male)

Good quality assembly

Description


  • Genus: Dictyota
  • Species: dichotoma
  • Strain: ODC1387m
  • Sex: Male
  • Ploidy: Haploid
  • Common name: No common name known

Resources

World occurrences (from GBIF)

Assembly

  • Sequencing: Illumina, Nanopore
  • Size: 851.15 Mbp
  • Number of contigs: 6019
  • GC content: 50.2%
  • N content: 0%
  • N50: 251.1 Kbp
  • L50: 1009

Annotation

  • Protein-coding genes: 20583
  • Gene length (average): 14498.52
  • Gene length (median): 5950.0
  • CDS length (average): 1190.84
  • CDS length (median): 741.0
  • CDS proportion (genome): 0.029%
  • Genes without introns: 5188
  • Number of contigs with at least one gene (genome): 73.3%
  • Number of contigs with at least one gene (bases): 91.6%

BUSCO results

Genome

  • Single-copy genes: 212
  • Duplicated genes: 3
  • Fragmented genes: 19
  • Missing genes: 69

Proteins

  • Single-copy genes: 252
  • Duplicated genes: 9
  • Fragmented genes: 14
  • Missing genes: 28
< !-- World occurences map, based on example found at https://tile.gbif.org/ui/4326/leaflet.html -- >