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Best Assembly Saccharina latissima (Female) (v2 assembly)

Near chromosome scale assembly

AlgaeBase

Worms

GGA

GGA

ncbi

Description


  • Genus: Saccharina
  • Species: latissima
  • Strain: SLPER63f
  • Sex: Female
  • Ploidy: Haploid
  • Common name: Sugar kelp

Resources

World occurrences (from GBIF)

Assembly

  • Version: v2
  • Sequencing: Illumina, PacBio, genetic-map-based pseudochromosomes
  • Size: 531.48 Mbp
  • Number of contigs: 2538
  • GC content: 49.7%
  • N content: 0%
  • N50: 12.52 Mbp
  • L50: 18

Annotation

  • Protein-coding genes: 18169
  • Gene length (average): 11317.7
  • Gene length (median): 8032.0
  • CDS length (average): 1353.57
  • CDS length (median): 1030.0
  • CDS proportion (genome): 0.046%
  • Genes without introns: 667
  • Number of contigs with at least one gene (genome): 45.2%
  • Number of contigs with at least one gene (bases): 94.6%

BUSCO results

Genome

  • Single-copy genes: 180
  • Duplicated genes: 1
  • Fragmented genes: 35
  • Missing genes: 39

Proteins

  • Single-copy genes: 182
  • Duplicated genes: 3
  • Fragmented genes: 34
  • Missing genes: 36

Additional genome assemblies for this species

< !-- World occurences map, based on example found at https://tile.gbif.org/ui/4326/leaflet.html -- >