Best Assembly Saccorhiza dermatodea

Draft genome

Description


  • Genus: Saccorhiza
  • Species: dermatodea
  • Strain: SderLu1190fm
  • Sex: Monoicous
  • Ploidy: Haploid
  • Common name: No common name known

Resources

Assembly

  • Sequencing: Illumina
  • Size: 335.7 Mbp
  • Number of contigs: 98404
  • GC content: 50.6%
  • N content: 0%
  • N50: 6.5 Kbp
  • L50: 13789

Annotation

  • Protein-coding genes: 17913
  • Gene length (average): 2965.66
  • Gene length (median): 1570.0
  • CDS length (average): 758.97
  • CDS length (median): 429.0
  • CDS proportion (genome): 0.039%
  • Genes without introns: 6274
  • Number of contigs with at least one gene (genome): 14.1%
  • Number of contigs with at least one gene (bases): 33.9%

BUSCO results

Genome

  • Single-copy genes: 98
  • Duplicated genes: 0
  • Fragmented genes: 94
  • Missing genes: 111

Proteins

  • Single-copy genes: 111
  • Duplicated genes: 1
  • Fragmented genes: 117
  • Missing genes: 74