Saccharina japonica

Description


  • Genus: Saccharina
  • Species: japonica
  • Strain: Unknown strain
  • Sex: Unknown
  • Ploidy: Diploid
  • Common name: kombu

Resources

Assembly

  • Sequencing: Illumina MatePE, PacBio
  • Size: 523.12 Mbp
  • Number of contigs: 32
  • GC content: 49.6%
  • N content: 0.17%
  • N50: 14.43 Mbp
  • L50: 6 bp

Annotation

  • Protein-coding genes: 18732
  • Gene length (average): 9588.62
  • Gene length (median): 6627.0
  • CDS length (average): 1657.5
  • CDS length (median): 1252.0
  • CDS proportion (genome): 0.056%
  • Genes without introns: 2802
  • Number of contigs with at least one gene (genome): 100.0%
  • Number of contigs with at least one gene (bases): 100.0%

BUSCO results

Genome

  • Single-copy genes: 210
  • Duplicated genes: 3
  • Fragmented genes: 23
  • Missing genes: 67

Proteins

  • Single-copy genes: 237
  • Duplicated genes: 8
  • Fragmented genes: 29
  • Missing genes: 29