Undaria pinnatifida

Description


  • Genus: Undaria
  • Species: pinnatifida
  • Strain: Kr2015
  • Sex: Unknown
  • Ploidy: Diploid
  • Common name: Wakame

Resources

Assembly

  • Sequencing: Illumina, PacBio, genetic-map-based pseudochromosomes
  • Size: 605.15 Mbp
  • Number of contigs: 33
  • GC content: 0%
  • N content: 60.1%
  • N50: 15.91 Mbp
  • L50: 8 bp

Annotation

  • Protein-coding genes: 20716
  • Gene length (average): 11125.64
  • Gene length (median): 8092.5
  • CDS length (average): 1343.43
  • CDS length (median): 998.5
  • CDS proportion (genome): 0.0438%
  • Genes without introns: 281
  • Number of contigs with at least one gene (genome): 93.93%
  • Number of contigs with at least one gene (bases): 99.97%

BUSCO results

Genome

  • Single-copy genes: 220
  • Duplicated genes: 0
  • Fragmented genes: 12
  • Missing genes: 71

Proteins

  • Single-copy genes: 239
  • Duplicated genes: 8
  • Fragmented genes: 23
  • Missing genes: 33